Blue pippin

Size selection was performed at the University of Maryland Genomics Resource Center using a Blue Pippin pulse-field gel electrophoresis instrument. A library was constructed and 24 SMRT cells were sequenced on their PacBio RS II using the P5-C3 chemistry. ... The bottom (blue) track shows the testis transcriptome assembly aligned to M_zebra ....

Genomic DNA was fragmented and end-repaired using G-tubes (Covaris, Woburn, MA, USA) for PacBio sequencing, and then processed using the SMRTbell Template Prep Kit v.1.0 (with a fragment size >10 Kb, as determined by the blue Pippin system) according to the manufacturer's instructions. (PacBio, Menlo Park, CA, USA).Pippin Gel Cassettes. Gel Cassettes are pre-cast with agarose, and use ethidium bromide to visualize DNA and provide more uniform migration of fragments. Cassettes have a capacity to run 4 samples and are shipped in boxes of 10 each. Loading dye and DNA marker (for calibration) sufficient for all 40 runs are provided with each shipment.

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Pippin Frisbie-Calder · Home · Samples · Woodcuts · Installations · Lagniappe · Store · About ... Bejewled Herald Brown ink blue paper white background.jpg ...Shop Sea Women's Pippin Smocked Patchwork-printed Cotton Maxi Apron Dress In Blue Multi from 600+ stores, starting at $425. Similar ones also available.The color blue symbolizes many things, including depth and stability. Often considered a male color, blue is also considered to be correlated with cold or cool, and calm, as it is the color of the sky and sea.

Shearing to 10 kb with Covaris G-tubes (5000 x g for 1 min each way) achieves similar results. Alternatively, for longer reads it is recommended not to shear and perform the ligation protocol as recommended, or include a size selection step with the Blue Pippin (Sage Sciences). Sequencing outcomes for all options are given in table below.For a subset of samples, 3 µl of each was pooled and concentrated for 450-650 bp size selection using a Blue Pippin 1.5% agarose cassette with R2 marker. The average size of the recovered ...BluePippin Operations Manual 460013 Rev E 1-1 1 Introduction Thank you for purchasing the BluePippin from Sage Science. The BluePippin is an Size selection on the Pippin is easier, safer, and more reproducible than traditional agarose gel extraction protocols involving a UV illuminator and a razor blade. ... Fragment Analyzer traces of 5 different Blue Pippin size selected Illumina libraries. Fragments between 275 and 525 bp were targeted in each library.Blue Pippin Instrument Pulsed-field automated DNA size selection system The Sage Science product portfolio combines pre-cast agarose cassettes with a high-precision, automated solution for the accurate and targeted size-selection of DNA fragments for library construction in NGS workflows Flexibility

The larger sample wells now allow a maximum load of 10 μg (100% up from standard Blue Pippin cassettes). Also the size of the elution module has been increased as well as the surface area of the filtration membrane, bringing about improved sample recovery and reproducibility. Blue Pippin software requirement: v6.31/6.40 CD31Previous methods have generally directly used the Pippin system to recover the inserted fragments in the 90-150 bp range, or have used bioinformatics methods to analyze reads in this length range. Thus, all lose or partially lose the ability to analyze fragments of other lengths, especially small fragments, as these small fragments can be ...[PIPPIN] My days are brighter than morning air Evergreen pine and autumn blue But all my days are twice as fair If I could share My days with you My nights are warmer than firecoals Incense and stars and smoke bamboo But nights were warm beyond compare If I could share My nights with you To dance in my dreams To shine when I need the sun With you ….

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The resulting SMRTcell templates were size-selected to 15–50 kb by Blue Pippin electrophoresis (Sage Sciences) and sequenced on a PacBio RS II instrument using P6-C4 sequencing chemistry. Data ...For each Nanopore library, the gDNA was size-selected (10-50 kb) with a Blue Pippin system (Sage Science, USA) and processed using the Ligation Sequencing 1D kit (SQKLSK109, Oxford Nanopore Technologies, UK) according to the manufacturer's instructions. Library construction and sequencing were done by the GridION X5/PromethION sequencer ...The Blue Pippin also does your size selection, so you don't burn out pores sequencing lots of little stuff. This should help yield too. Then it's all down to the library prep, and @gringer's answer has some good tips on that. Share. Improve this answer. Follow

Check out the latest papers citing automated DNA size selection from Sage Science. Check out our new app note with @Diagenode! Best practices when using #Megaruptor3 w/ #PippinHT or #BluePippin. Includes our new Range+T size selection method & tips on getting tight HMW DNA in the 9-30kb range. #PacBio #HiFisequencing #nanopore #genomics https ...He was an eight-time member of the NBA All-Defensive First Team (1992-1999) and the 1994 All-Star MVP. Yet, his career averages of 16.1 points, 6.4 rebounds and 5.2 assists were not staggering ...In total, 48 unique barcode adapters were used in initial ligation, and sub-pools of these 48 barcodes were size selected using a 1.5% agarose gel cassette and target size selection of “narrow 450 bp” on a Blue Pippin electrophoresis unit …

aubrey nash Electrophoresis voltage – 25V, 100V or 150V constant, 100 V pulse field. Optical detection – 470 nm excitation, 525 nm emission. Power requirements – 100-250 VAC, 2.5 A, 50-60 Hz. Dimensions – 7h x 11w x 21d (in), 18h x 28 w x53d (cm) Weight – 7. kg (15 lbs.) * 10 µg when using the High Pass PLUS cassettes. swot weaknessescultural competence continuum chart NGS can be roughly divided into the process elements of sample pre-processing, library preparation, sequencing itself and bioinformatics (Fig. 1).Regardless of the underlying principles of the respective sequencing method, all modern sequencing technologies require dedicated sample preparation to yield the sequencing library loaded … jesse owens videos Contact for: PacBio, Blue Pippin, Bioruptor [email protected]. Siranoosh Ashtari. Contact for: NovaSeq, NextSeq & MiSeq sequencing, microRNA library preps, and Covaris [email protected]. Emily Kumimoto. Contact for: Illumina sequencing library preparations [email protected]. Ruta Sahasrabudhe, PhDblue light for visualization. Do not use ethidium bromide and/or UV light since they can induce DNA damage. The SYBR stains can be easily removed from nucleic acids during the gel-extraction process, e.g., using Qiagen® gel-extraction kits. 2) Purity of your DNA sample: DNA purity can be determined by using the NanoDrop® instrument or other verizon locker pickup locationswhere is a capital one bank near meclimate of south america For Nanopore sequencing, large fragments of genomic DNA were obtained using the Blue Pippin automatic nucleic acid fragment recovery system (Sage Science, MA), and barcodes were added using the Nanopore EXP-NBD104 kit. banish 22k review The selected size for this method was 314-414 bp using the Blue Pippin system. We predicted that there were 117,528 SLAF tags distributed in the genome with 6.19% located in repetitive regions. To further evaluate the efficiency of the restriction enzyme digestion scheme, Arabidopsis thaliana was selected as an example.Monarch HMW DNA Extraction Kit produces high molecular weight DNA with excellent yields, purity, and fragment length as compared to other commercially available kits. HMW was isolated from 1x106 HEK293 cells and fresh human blood with the kits indicated in the figure legend. Blood input volumes were used as specified in manufacturers ... sally hooded dryerpastime pavilion movieshow to get purple key cards in gimkit This instructional video from Sage Science guides you through the process of preparing your cassette for use with either the Pippin Prep or BluePippin automa...SDS-GHS: Reagent Replacement Kit for Dye Free Pippin Prep Cassettes (RIP2010, RIK2010, RIK 1510) SDS-GHS: Pippin Prep Cassettes with Ethidium Homodimer, Reagent Replacement Kit (REK2010) SDS-GHS: 10X KBB Electrophoresis Buffer (KBB1001) SDS-GHS 0.5X KBB buffer (PN190039) SDS-GHS: DNA Control Kits for Pippin Prep and BluePippin.